WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in N2 1-day post L4 adult hermaphrodite comparing to in N2 L4 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_adult_vs_L4_downregulated_adult

0 Anatomy Terms

47 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003261 mir-2 M04C9.7 Caenorhabditis elegans
WBGene00003284 mir-56 F09A5.8 Caenorhabditis elegans
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003278 mir-50 Y71G12B.29 Caenorhabditis elegans
WBGene00003338 mir-244 T04D1.5 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00003339 mir-245 F55D12.7 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans
WBGene00045329 mir-795 F33E2.9 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003271 mir-43 ZK930.9 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003294 mir-66 Y48G9A.15 Caenorhabditis elegans
WBGene00003304 mir-76 C44B11.5 Caenorhabditis elegans
WBGene00003295 mir-67 EGAP1.2 Caenorhabditis elegans
WBGene00194828 mir-2214 B0361.12 Caenorhabditis elegans
WBGene00003314 mir-86 Y56A3A.34 Caenorhabditis elegans
WBGene00003336 mir-242 F36A4.16 Caenorhabditis elegans
WBGene00045351 mir-790 T12E12.8 Caenorhabditis elegans
WBGene00003325 mir-232 F13H10.7 Caenorhabditis elegans
WBGene00003280 mir-52 Y37A1B.16 Caenorhabditis elegans
WBGene00045330 mir-798 Y64G10A.14 Caenorhabditis elegans
WBGene00045353 mir-792 F59D6.8 Caenorhabditis elegans
WBGene00003349 mir-255 F08F3.11 Caenorhabditis elegans
WBGene00023454 mir-357 F25G6.10 Caenorhabditis elegans
WBGene00023455 mir-358 F25G6.11 Caenorhabditis elegans
WBGene00003315 mir-87 F10C2.8 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule