WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in lin-36(we31) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-36(we31)_upregulated

0 Anatomy Terms

243 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000101 aka-1 D1022.7 Caenorhabditis elegans
WBGene00000197 aars-2 F28H1.3 Caenorhabditis elegans
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000379 cct-4 K01C8.10 Caenorhabditis elegans
WBGene00000380 cct-5 C07G2.3 Caenorhabditis elegans
WBGene00000405 cdk-1 T05G5.3 Caenorhabditis elegans
WBGene00000419 ced-5 C02F4.1 Caenorhabditis elegans
WBGene00000467 cep-1 F52B5.5 Caenorhabditis elegans
WBGene00000498 chk-1 Y39H10A.7 Caenorhabditis elegans
WBGene00000519 cku-70 Y47D3A.4 Caenorhabditis elegans
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
WBGene00000766 coq-6 K07B1.2 Caenorhabditis elegans
WBGene00000830 ctl-1 Y54G11A.6 Caenorhabditis elegans
WBGene00000871 cye-1 C37A2.4 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00000911 daf-15 C10C5.6 Caenorhabditis elegans
WBGene00000939 dcr-1 K12H4.8 Caenorhabditis elegans
WBGene00000983 dhs-20 F35B12.2 Caenorhabditis elegans
WBGene00001002 div-1 R01H10.1 Caenorhabditis elegans
WBGene00001016 dna-2 F43G6.1 Caenorhabditis elegans
WBGene00001049 dog-1 F33H2.1 Caenorhabditis elegans
WBGene00001057 dpf-4 F01F1.5 Caenorhabditis elegans
WBGene00001092 dro-1 F53A2.5 Caenorhabditis elegans
WBGene00001372 exo-3 R09B3.1 Caenorhabditis elegans
WBGene00001413 fem-3 C01F6.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003021 lin-36 F44B9.6 Caenorhabditis elegans

0 Regulated By Molecule