WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes down regulated in hcf-1(-), downregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1down_sir-2.1down_daf-2nc
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0 Anatomy Terms

93 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000239 bas-1 C05D2.4 Caenorhabditis elegans
WBGene00000515 ckc-1 T27A10.3 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000651 col-75 K03H9.2 Caenorhabditis elegans
WBGene00000685 col-111 F29B9.9 Caenorhabditis elegans
WBGene00000732 col-159 F57B1.3 Caenorhabditis elegans
WBGene00000740 col-167 T10E10.2 Caenorhabditis elegans
WBGene00000741 col-168 T10E10.1 Caenorhabditis elegans
WBGene00000753 col-180 C44C10.1 Caenorhabditis elegans
WBGene00000788 cpz-1 F32B5.8 Caenorhabditis elegans
WBGene00001149 bcat-1 K02A4.1 Caenorhabditis elegans
WBGene00001328 epi-1 K08C7.3 Caenorhabditis elegans
WBGene00001863 him-4 F15G9.4 Caenorhabditis elegans
WBGene00002271 lec-8 R07B1.10 Caenorhabditis elegans
WBGene00003409 mrp-3 E03G2.2 Caenorhabditis elegans
WBGene00003474 mtl-2 T08G5.10 Caenorhabditis elegans
WBGene00003941 pbo-1 Y71H2AL.1 Caenorhabditis elegans
WBGene00003956 pcp-1 ZK112.1 Caenorhabditis elegans
WBGene00004796 sid-2 ZK520.2 Caenorhabditis elegans
WBGene00004875 smd-1 F47G4.7 Caenorhabditis elegans
WBGene00004990 spp-5 T08A9.9 Caenorhabditis elegans
WBGene00007693 cest-7 C23H4.4 Caenorhabditis elegans
WBGene00007743 C26C6.9 C26C6.9 Caenorhabditis elegans
WBGene00008542 scav-6 F07A5.3 Caenorhabditis elegans
WBGene00008629 cpt-5 F09F3.9 Caenorhabditis elegans
WBGene00008998 ncs-4 F21A10.1 Caenorhabditis elegans
WBGene00009058 F22E12.1 F22E12.1 Caenorhabditis elegans
WBGene00009146 F26C11.1 F26C11.1 Caenorhabditis elegans
WBGene00009403 F35C11.4 F35C11.4 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule