WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Authors extracted all genes with more than 25 mapped reads and computed fold changes for all gene loci between wild type and mutants. The group of genes with 4-fold up-regulation in wild type was considered to be specifically expressed in the germline, while genes with 4-fold down-regulation in wild type where assumed to be specific to somatic cell lineages. Description  Genes specifically expressed in germline when comparing RNAseq data of N2 to glp-4(bn2ts).
Primary Identifier  WBPaper00044760:germline_specific

1 Anatomy Terms

Definition Name Synonym Primary Identifier
cell line which early in development becomes differentiated from the remaining somatic cell line, and alone has the potential to undergo meiosis and form gametes. germ line germline WBbt:0005784

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000079 adr-1 H15N14.1 Caenorhabditis elegans
WBGene00000090 age-1 B0334.8 Caenorhabditis elegans
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000101 aka-1 D1022.7 Caenorhabditis elegans
WBGene00000121 aly-2 F23B2.6 Caenorhabditis elegans
WBGene00000122 aly-3 M18.7 Caenorhabditis elegans
WBGene00000139 amx-3 F25C8.2 Caenorhabditis elegans
WBGene00000143 apc-2 K06H7.6 Caenorhabditis elegans
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000145 apc-11 F35G12.9 Caenorhabditis elegans
WBGene00000146 ape-1 F46F3.4 Caenorhabditis elegans
WBGene00000168 apx-1 K08D9.3 Caenorhabditis elegans
WBGene00000206 asb-1 F35G12.10 Caenorhabditis elegans
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
WBGene00000236 bag-1 F57B10.11 Caenorhabditis elegans
WBGene00000250 bir-2 C50B8.2 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000271 brf-1 F45E12.2 Caenorhabditis elegans
WBGene00000274 btf-1 F15D4.1 Caenorhabditis elegans
WBGene00000275 bub-1 R06C7.8 Caenorhabditis elegans
WBGene00000382 cdc-6 C43E11.10 Caenorhabditis elegans
WBGene00000383 cdc-14 C17G10.4 Caenorhabditis elegans
WBGene00000386 cdc-25.1 K06A5.7 Caenorhabditis elegans
WBGene00000387 cdc-25.2 F16B4.8 Caenorhabditis elegans
WBGene00000389 cdc-25.4 R05H5.2 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule