WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2. Description  Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in coelomocyte.
Primary Identifier  WBPaper00066447:Day8_vs_Day1_upregulated_coelomocyte
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles. coelomocyte   WBbt:0005751

12 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00077709 mir-1822 ZK84.8 Caenorhabditis elegans
WBGene00194823 mir-2208.2 Y55F3AM.17 Caenorhabditis elegans
WBGene00003286 mir-58.1 Y67D8A.4 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00003281 mir-53 F36H1.8 Caenorhabditis elegans
WBGene00003347 mir-253 F44E7.11 Caenorhabditis elegans
WBGene00045341 mir-784 C18A11.8 Caenorhabditis elegans
WBGene00003333 mir-239.2 C34E11.6 Caenorhabditis elegans
WBGene00003332 mir-239.1 C34E11.5 Caenorhabditis elegans
WBGene00077707 mir-1829.3 F39B1.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule