WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data were analyzed using Resolver Gene Expression Data Analysis System, version 5.1 (Rosetta Inpharmatics). Three biologic replicates per condition were normalized using the Resolver intensity error model for single color chips. Conditions were compared using Resolver to determine the fold change between conditions for each probe set and to generate a P value using a modified t-test. Probe sets were considered differentially expressed if the fold change was 2-fold or greater (P < 0.01). When comparing datasets, the overlap expected by chance alone was determined in 50 groups of randomly selected C. elegans genes using Regulatory Sequence Analysis Tools (http://rsat.ulb.ac.be/rsat/), a technique that has been used for similar analyses. P values were determined using chi-square tests. Description  Differentially expressed genes in the following exposure comparison:live C. albicans versus heat-killed E. coli.
Primary Identifier  WBPaper00039851:Live_C_albicans_vs_HK_OP50 Regulated By Treatment  Fungi infection: Candida albicans, live C. albicans versus heat-killed E. coli.

0 Anatomy Terms

309 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000212 asm-2 ZK455.4 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans
WBGene00000298 cat-4 F32G8.6 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000539 cln-3.1 F07B10.1 Caenorhabditis elegans
WBGene00000541 cln-3.3 ZC190.1 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000625 col-48 Y54E10BL.2 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000646 H17B01.2 H17B01.2 Caenorhabditis elegans
WBGene00000712 col-139 F41F3.4 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000832 ctn-1 Y23H5A.5 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00000986 dhs-23 R08H2.1 Caenorhabditis elegans
WBGene00001099 dsc-4 K02D7.4 Caenorhabditis elegans
WBGene00001135 eat-4 ZK512.6 Caenorhabditis elegans
WBGene00001150 ech-1.1 C29F3.1 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans
WBGene00001366 exc-5 C33D9.1 Caenorhabditis elegans
WBGene00001391 far-7 K01A2.2 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001398 fat-6 VZK822L.1 Caenorhabditis elegans
WBGene00001453 flp-10 T06C10.4 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001581 gfi-1 F57F4.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

0 Processes

0 Regulated By Gene

0 Regulated By Molecule