WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  The approaches of Gene Set Enrichment Analysis (GSEA) were performed using Category package in version 2.6.0 of Bioconductor to identify the significantly enriched pathways and genes in both above two subsets. In this analysis, the gene sets with less than 10 genes were excluded. The t-statistic mean of the genes was computed in each KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway. Using a permutation test with 1000 times, the cutoff of significance level p value was set as 0.01 for the most significant pathways related to aging. Accordingly, the significant pathways and genes were then identified under the comparison between different time points, including from L4 to D6 and from D6 to D15. Description  Genes with dynamic regulation pattern in signaling pathways during aging, based on re-analysis of microarray datasets.
Primary Identifier  WBPaper00045140:aging_dynamic_regulation

0 Anatomy Terms

12 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000416 ced-2 Y41D4B.13 Caenorhabditis elegans
WBGene00000870 cyd-1 Y38F1A.5 Caenorhabditis elegans
WBGene00003030 lin-45 Y73B6A.5 Caenorhabditis elegans
WBGene00003965 pdk-1 H42K12.1 Caenorhabditis elegans
WBGene00004813 skr-7 Y47D7A.1 Caenorhabditis elegans
WBGene00004814 skr-8 C52D10.9 Caenorhabditis elegans
WBGene00004815 skr-9 C52D10.7 Caenorhabditis elegans
WBGene00004819 skr-13 C52D10.8 Caenorhabditis elegans
WBGene00004820 skr-14 Y47D7A.8 Caenorhabditis elegans
WBGene00004858 sma-4 R12B2.1 Caenorhabditis elegans
WBGene00014109 chpf-1 ZK856.8 Caenorhabditis elegans
WBGene00019108 chpf-2 F59D6.7 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 11-15 days after L4-adult molt. 14-18 days after first cleavage. 11-15 days post-L4 adult hermaphrodite Ce WBls:0000074
  At 20 Centigrade: 4-7 days after L4-adult molt. 7-10 days after first cleavage. 4-7 days post-L4 adult hermaphrodite Ce WBls:0000069

0 Processes

0 Regulated By Gene

0 Regulated By Molecule