WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 53, col-128-cdh-10_9234, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:col-128-cdh-10_9234

0 Anatomy Terms

117 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000255 bli-5 F45G2.5 Caenorhabditis elegans
WBGene00000399 cdh-7 R05H10.6 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000618 col-41 T10B10.1 Caenorhabditis elegans
WBGene00000631 col-54 F33D11.3 Caenorhabditis elegans
WBGene00000702 col-128 F12F6.9 Caenorhabditis elegans
WBGene00000905 daf-9 T13C5.1 Caenorhabditis elegans
WBGene00001068 dpy-6 F16F9.2 Caenorhabditis elegans
WBGene00001070 dpy-8 C31H2.2 Caenorhabditis elegans
WBGene00001079 dpy-20 T22B3.1 Caenorhabditis elegans
WBGene00001478 fmo-3 Y39A1A.19 Caenorhabditis elegans
WBGene00001690 grd-1 R08B4.1 Caenorhabditis elegans
WBGene00003015 lin-29 W03C9.4 Caenorhabditis elegans
WBGene00003523 nas-4 C05D11.6 Caenorhabditis elegans
WBGene00003525 nas-6 4R79.1 Caenorhabditis elegans
WBGene00003532 nas-13 F39D8.4 Caenorhabditis elegans
WBGene00003552 nas-36 C26C6.3 Caenorhabditis elegans
WBGene00003573 ncx-8 C13D9.7 Caenorhabditis elegans
WBGene00003703 nhr-113 ZK1025.9 Caenorhabditis elegans
WBGene00004134 myrf-1 F59B10.1 Caenorhabditis elegans
WBGene00004226 ptr-12 K07A3.2 Caenorhabditis elegans
WBGene00004309 rap-3 C08F8.7 Caenorhabditis elegans
WBGene00005949 srx-58 C29F3.6 Caenorhabditis elegans
WBGene00006486 zipt-16 T11F9.2 Caenorhabditis elegans
WBGene00007482 C09F12.2 C09F12.2 Caenorhabditis elegans
WBGene00007868 srlf-4 C32H11.5 Caenorhabditis elegans
WBGene00007938 C34F6.1 C34F6.1 Caenorhabditis elegans
WBGene00008553 F07C6.2 F07C6.2 Caenorhabditis elegans
WBGene00008762 ztf-2 F13G3.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule