WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering. Description  Transcripts that showed significantly altered expression after 48 hour exposure to Ag-MNP.
Primary Identifier  WBPaper00049311:Ag-MNP_regulated

0 Anatomy Terms

126 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000041 aco-2 F54H12.1 Caenorhabditis elegans
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000250 bir-2 C50B8.2 Caenorhabditis elegans
WBGene00000407 cdk-5 T27E9.3 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00000659 col-84 K12D12.3 Caenorhabditis elegans
WBGene00000688 col-114 D2024.8 Caenorhabditis elegans
WBGene00000697 col-123 W08D2.6 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000782 cpr-2 F36D3.9 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00001320 ent-1 ZK809.4 Caenorhabditis elegans
WBGene00001423 fib-1 T01C3.7 Caenorhabditis elegans
WBGene00001564 icl-1 C05E4.9 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001734 grl-25 ZK643.8 Caenorhabditis elegans
WBGene00001752 gst-4 K08F4.7 Caenorhabditis elegans
WBGene00001796 gtl-2 F54D1.5 Caenorhabditis elegans
WBGene00002083 inf-1 F57B9.6 Caenorhabditis elegans
WBGene00002263 lea-1 K08H10.1 Caenorhabditis elegans
WBGene00003096 lys-7 C02A12.4 Caenorhabditis elegans
WBGene00003422 msh-6 Y47G6A.11 Caenorhabditis elegans
WBGene00003616 nhr-17 C02B4.2 Caenorhabditis elegans
WBGene00003758 nlp-20 F45E4.8 Caenorhabditis elegans
WBGene00003992 pgl-1 ZK381.4 Caenorhabditis elegans
WBGene00004094 ppw-2 Y110A7A.18 Caenorhabditis elegans
WBGene00004398 rol-8 ZK1290.3 Caenorhabditis elegans
WBGene00004798 sip-1 F43D9.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
Ag nanoparticles WBMol:00005288