WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For each set of mutant data, the repeats were averaged, and a Z test [Z=(observedexpected)\/SE] was performed in Excel. A moderate correction for multiple testing (~17,600 genes) was performed by multiplying the calculated P-value by 10,000. After this correction, all genes with up- or downregulation greater than twofold, P<0.05 in any given mutant were selected. The hypergeometric probability test was used to calculate the significance of overlap of gene groups. Authors determined whether transcripts of Group I-IV genes are bound by GLD-1, based on a minimum criteria of >1.5 enrichment in GLD-1 immunoprecipitated samples compared to control immunoprecipitations (P < 0.01). Description  Genes downregulated in dpl-1(n3316) and efl-1(n3639) mutants.
Primary Identifier  WBPaper00027758:Group_I

0 Anatomy Terms

82 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000866 cyb-2.1 Y43E12A.1 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00000980 dhs-17 F29G9.6 Caenorhabditis elegans
WBGene00001161 efl-1 Y102A5C.18 Caenorhabditis elegans
WBGene00001603 gln-2 K03H1.1 Caenorhabditis elegans
WBGene00001607 gln-6 C28D4.3 Caenorhabditis elegans
WBGene00001683 gpd-1 T09F3.3 Caenorhabditis elegans
WBGene00001684 gpd-2 K10B3.8 Caenorhabditis elegans
WBGene00001685 gpd-3 K10B3.7 Caenorhabditis elegans
WBGene00001686 gpd-4 F33H1.2 Caenorhabditis elegans
WBGene00003124 mai-1 K10B3.9 Caenorhabditis elegans
WBGene00003228 mex-1 W03C9.7 Caenorhabditis elegans
WBGene00003230 mex-5 W02A2.7 Caenorhabditis elegans
WBGene00003231 mex-6 AH6.5 Caenorhabditis elegans
WBGene00003865 oma-2 ZC513.6 Caenorhabditis elegans
WBGene00004239 puf-3 Y45F10A.2 Caenorhabditis elegans
WBGene00004374 rme-2 T11F8.3 Caenorhabditis elegans
WBGene00004392 rnr-2 C03C10.3 Caenorhabditis elegans
WBGene00004984 spn-4 ZC404.8 Caenorhabditis elegans
WBGene00005022 sqv-4 F29F11.1 Caenorhabditis elegans
WBGene00006537 tbb-2 C36E8.5 Caenorhabditis elegans
WBGene00006538 tbb-4 B0272.1 Caenorhabditis elegans
WBGene00007024 plin-1 W01A8.1 Caenorhabditis elegans
WBGene00007332 C05C10.5 C05C10.5 Caenorhabditis elegans
WBGene00007773 C27C12.3 C27C12.3 Caenorhabditis elegans
WBGene00008218 nasp-2 C50B6.2 Caenorhabditis elegans
WBGene00009186 trcs-1 F27C8.6 Caenorhabditis elegans
WBGene00009300 F31F6.1 F31F6.1 Caenorhabditis elegans
WBGene00010555 K04C1.5 K04C1.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage after an hermaphrodite animal is fully-developed and reaches maturity. adult hermaphrodite Ce WBls:0000057

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001061 dpl-1 T23G7.1 Caenorhabditis elegans
WBGene00001161 efl-1 Y102A5C.18 Caenorhabditis elegans

0 Regulated By Molecule