WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 69, Y71G12B.18-K06H6.1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:Y71G12B.18-K06H6.1

0 Anatomy Terms

39 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001626 gly-1 F44F4.6 Caenorhabditis elegans
WBGene00006620 svh-1 C07G1.1 Caenorhabditis elegans
WBGene00009024 F21G4.3 F21G4.3 Caenorhabditis elegans
WBGene00010122 F55G11.1 F55G11.1 Caenorhabditis elegans
WBGene00010166 gmd-2 F56H6.5 Caenorhabditis elegans
WBGene00010253 F58E6.4 F58E6.4 Caenorhabditis elegans
WBGene00011024 R05A10.7 R05A10.7 Caenorhabditis elegans
WBGene00011362 cest-1.1 T02B5.1 Caenorhabditis elegans
WBGene00011515 oac-42 T06C12.8 Caenorhabditis elegans
WBGene00012170 W01B6.3 W01B6.3 Caenorhabditis elegans
WBGene00012596 nhr-234 Y38E10A.18 Caenorhabditis elegans
WBGene00013646 Y105C5B.3 Y105C5B.3 Caenorhabditis elegans
WBGene00014216 ZK1086.2 ZK1086.2 Caenorhabditis elegans
WBGene00015757 C14C6.3 C14C6.3 Caenorhabditis elegans
WBGene00015758 nhr-155 C14C6.4 Caenorhabditis elegans
WBGene00015760 C14C6.6 C14C6.6 Caenorhabditis elegans
WBGene00015762 C14C6.8 C14C6.8 Caenorhabditis elegans
WBGene00016847 C50F7.9 C50F7.9 Caenorhabditis elegans
WBGene00017019 D1014.6 D1014.6 Caenorhabditis elegans
WBGene00017020 D1014.7 D1014.7 Caenorhabditis elegans
WBGene00018809 F54D10.8 F54D10.8 Caenorhabditis elegans
WBGene00018913 F56A4.5 F56A4.5 Caenorhabditis elegans
WBGene00019449 K06H6.1 K06H6.1 Caenorhabditis elegans
WBGene00019450 K06H6.2 K06H6.2 Caenorhabditis elegans
WBGene00019451 nstp-7 K06H6.3 Caenorhabditis elegans
WBGene00022156 Y71G12B.18 Y71G12B.18 Caenorhabditis elegans
WBGene00022569 ZC239.6 ZC239.6 Caenorhabditis elegans
WBGene00008477 clec-17 E03H4.10 Caenorhabditis elegans
WBGene00017711 F22E5.13 F22E5.13 Caenorhabditis elegans
WBGene00017998 F33D4.6 F33D4.6 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule