WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in prg-1(wm161) comparing to in N2.
Primary Identifier  WBPaper00045316:miRNA_prg-1_downregulated_L3

0 Anatomy Terms

59 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003284 mir-56 F09A5.8 Caenorhabditis elegans
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003278 mir-50 Y71G12B.29 Caenorhabditis elegans
WBGene00003338 mir-244 T04D1.5 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00003307 mir-79 C12C8.4 Caenorhabditis elegans
WBGene00045328 mir-794 T07D10.7 Caenorhabditis elegans
WBGene00077709 mir-1822 ZK84.8 Caenorhabditis elegans
WBGene00003288 mir-60 C32D5.13 Caenorhabditis elegans
WBGene00003329 mir-236 C52E12.7 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003266 mir-38 Y62F5A.5 Caenorhabditis elegans
WBGene00003267 mir-39 Y62F5A.6 Caenorhabditis elegans
WBGene00014534 mir-355 T27D12.5 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003271 mir-43 ZK930.9 Caenorhabditis elegans
WBGene00003305 mir-77 T21B4.13 Caenorhabditis elegans
WBGene00003327 mir-234 C13B4.3 Caenorhabditis elegans
WBGene00003292 mir-64 Y48G9A.13 Caenorhabditis elegans
WBGene00003294 mir-66 Y48G9A.15 Caenorhabditis elegans
WBGene00003295 mir-67 EGAP1.2 Caenorhabditis elegans
WBGene00194828 mir-2214 B0361.12 Caenorhabditis elegans
WBGene00003324 mir-231 R13A5.14 Caenorhabditis elegans
WBGene00003331 mir-238 K01F9.5 Caenorhabditis elegans
WBGene00003318 mir-90 K01F9.1 Caenorhabditis elegans
WBGene00050922 mir-1020 T16G12.11 Caenorhabditis elegans
WBGene00003274 mir-46 ZK525.3 Caenorhabditis elegans
WBGene00003336 mir-242 F36A4.16 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004178 prg-1 D2030.6 Caenorhabditis elegans

0 Regulated By Molecule