WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Statistical analysis was based on t-test for independent samples via SPSS to compare each of the nicotine treatments with control (i.e. low vs. control and high vs. control). Welch test correction was performed to account for unequal variance in each of the compared groups (control and treatment). In addition, to increase the statistical stringency, miRNAs differential expression was deemed significant only if it fulfilled two criteria: p value , 0.05 and expression changed by at least 50% relative to control. Description  miRNAs in F2 generation up regulated by exposure to 20uM and 20mM nicotine during F0 generation.
Primary Identifier  WBPaper00049006:nicotine_upregulated_F2

0 Anatomy Terms

9 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00003260 mir-1 T09B4.11 Caenorhabditis elegans
WBGene00077719 mir-1828 T22A3.9 Caenorhabditis elegans
WBGene00194809 mir-2218.1 W09G3.10 Caenorhabditis elegans
WBGene00045351 mir-790 T12E12.8 Caenorhabditis elegans
WBGene00003279 mir-51 F36H1.7 Caenorhabditis elegans
WBGene00045360 mir-800 R04A9.8 Caenorhabditis elegans
WBGene00194840 mir-2212 R11.6 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
nicotine WBMol:00001980