WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in prg-1(wm161) 1-day post L4 adult hermaphrodite comparing to in prg-1(wm161) L4 larva.
Primary Identifier  WBPaper00045316:miRNA_prg-1_adult_vs_L4_upregulated_adult

0 Anatomy Terms

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003305 mir-77 T21B4.13 Caenorhabditis elegans
WBGene00003340 mir-246 ZK593.10 Caenorhabditis elegans
WBGene00003287 mir-59 B0035.17 Caenorhabditis elegans
WBGene00003298 mir-70 T10H9.7 Caenorhabditis elegans
WBGene00023454 mir-357 F25G6.10 Caenorhabditis elegans
WBGene00023455 mir-358 F25G6.11 Caenorhabditis elegans
WBGene00003334 mir-240 C39D10.10 Caenorhabditis elegans
WBGene00045343 mir-786 C39D10.12 Caenorhabditis elegans
WBGene00045359 mir-799 F18E9.9 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule