WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  The following three lines of R code were used to perform the classification: increasing <-2*amplitude-PC1 < -1.7; oscillating <-!increasing & (amplitude > 0.55); flat <-!increasing & !oscillating; Note that the amplitude of a sinusoidal wave corresponds to only half the fold change between trough and peak. Description  Genes that showed oscillating mRNA expression level throughout the 16 hour time courses from L3 larva to young adult.
Primary Identifier  WBPaper00044736:oscillating_dev_expression
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0 Anatomy Terms

2756 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000002 aat-1 F27C8.1 Caenorhabditis elegans
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
WBGene00000008 aat-7 F54D12.3 Caenorhabditis elegans
WBGene00000009 aat-8 F28F9.4 Caenorhabditis elegans
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000027 abu-4 Y5H2A.3 Caenorhabditis elegans
WBGene00000029 abu-6 C03A7.7 Caenorhabditis elegans
WBGene00000030 abu-7 C03A7.8 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000038 ace-4 Y48B6A.7 Caenorhabditis elegans
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
WBGene00000061 lgc-11 F48E3.7 Caenorhabditis elegans
WBGene00000062 acr-23 F59B1.9 Caenorhabditis elegans
WBGene00000082 adt-1 C02B4.1 Caenorhabditis elegans
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000084 aex-1 D2030.10 Caenorhabditis elegans
WBGene00000115 alh-9 F01F1.6 Caenorhabditis elegans
WBGene00000133 amt-1 C05E11.4 Caenorhabditis elegans
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000138 amx-2 B0019.1 Caenorhabditis elegans
WBGene00000172 aqp-4 F40F9.9 Caenorhabditis elegans
WBGene00000175 aqp-7 M02F4.8 Caenorhabditis elegans
WBGene00000176 aqp-8 K02G10.7 Caenorhabditis elegans
WBGene00000220 atf-2 K08F8.2 Caenorhabditis elegans
WBGene00000225 atgp-2 C38C6.2 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule