WormMine: ExpressionCluster WBPaper00037950:coelomocytes_L2-larva_expressed

• Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes.
• Description: Genes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
• Primary Identifier: WBPaper00037950:coelomocytes_L2-larva_expressed

1 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles.	coelomocyte		WBbt:0005751

6242 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00000001	aap-1	Y110A7A.10	Caenorhabditis elegans
WBGene00000009	aat-8	F28F9.4	Caenorhabditis elegans
WBGene00000019	abt-1	C24F3.5	Caenorhabditis elegans
WBGene00000023	abt-5	Y53C10A.9	Caenorhabditis elegans
WBGene00000025	abu-2	F19G12.7	Caenorhabditis elegans
WBGene00000045	acr-6	ZK973.5	Caenorhabditis elegans
WBGene00000050	acr-11	D2092.3	Caenorhabditis elegans
WBGene00000051	acr-12	R01E6.4	Caenorhabditis elegans
WBGene00000053	acr-14	T05C12.2	Caenorhabditis elegans
WBGene00000056	acr-17	F53E10.2	Caenorhabditis elegans
WBGene00000059	acr-20	R06A4.10	Caenorhabditis elegans
WBGene00000061	lgc-11	F48E3.7	Caenorhabditis elegans
WBGene00000074	adm-2	C04A11.4	Caenorhabditis elegans
WBGene00000075	adm-4	ZK154.7	Caenorhabditis elegans
WBGene00000079	adr-1	H15N14.1	Caenorhabditis elegans
WBGene00000083	adt-2	F08C6.1	Caenorhabditis elegans
WBGene00000084	aex-1	D2030.10	Caenorhabditis elegans
WBGene00000088	aex-5	F32A7.6	Caenorhabditis elegans
WBGene00000092	ags-3	F32A6.4	Caenorhabditis elegans
WBGene00000095	aha-1	C25A1.11	Caenorhabditis elegans
WBGene00000097	aip-1	F58E10.4	Caenorhabditis elegans
WBGene00000100	ajm-1	C25A11.4	Caenorhabditis elegans
WBGene00000101	aka-1	D1022.7	Caenorhabditis elegans
WBGene00000106	alg-2	T07D3.7	Caenorhabditis elegans
WBGene00000107	alh-1	F54D8.3	Caenorhabditis elegans
WBGene00000108	alh-2	K04F1.15	Caenorhabditis elegans
WBGene00000118	alh-12	Y69F12A.2	Caenorhabditis elegans
WBGene00000120	aly-1	C01F6.5	Caenorhabditis elegans
WBGene00000121	aly-2	F23B2.6	Caenorhabditis elegans
WBGene00000133	amt-1	C05E11.4	Caenorhabditis elegans

1 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch.		L2 larva Ce	WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule