WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Analysis of gene expression data was carried out with the Affymetrix Transcriptome Analysis Console. Data preprocessing (using RMA normalization) and QC metrics were performed using Affymetrix Expression Console TM and manually inspected afterwards. Expression analysis was carried out for each two pairwise conditions. FDR statistical correction for multiple testing resulted in a slightly lower number of DEGs in most cases. P-value < 0.05 and fold change > 2.0 were used to determine differentially expressed genes. Description  Genes from N2 animals with significantly increased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO.
Primary Identifier  WBPaper00048989:N2_rapamycin_upregulated

0 Anatomy Terms

2424 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000007 aat-6 T11F9.4 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000028 abu-5 Y105C5A.4 Caenorhabditis elegans
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
WBGene00000047 acr-8 ZC504.2 Caenorhabditis elegans
WBGene00000061 lgc-11 F48E3.7 Caenorhabditis elegans
WBGene00000064 act-2 T04C12.5 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000070 acy-3 C44F1.5 Caenorhabditis elegans
WBGene00000110 alh-4 T05H4.13 Caenorhabditis elegans
WBGene00000133 amt-1 C05E11.4 Caenorhabditis elegans
WBGene00000140 anc-1 ZK973.6 Caenorhabditis elegans
WBGene00000149 apl-1 C42D8.8 Caenorhabditis elegans
WBGene00000172 aqp-4 F40F9.9 Caenorhabditis elegans
WBGene00000182 arf-1 B0336.2 Caenorhabditis elegans
WBGene00000188 arl-3 F19H8.3 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000197 aars-2 F28H1.3 Caenorhabditis elegans
WBGene00000223 atf-7 C07G2.2 Caenorhabditis elegans
WBGene00000238 bar-1 C54D1.6 Caenorhabditis elegans
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000251 bli-1 C09G5.6 Caenorhabditis elegans
WBGene00000252 bli-2 F59E12.12 Caenorhabditis elegans
WBGene00000255 bli-5 F45G2.5 Caenorhabditis elegans
WBGene00000266 bre-1 C53B4.7 Caenorhabditis elegans
WBGene00000268 bre-3 B0464.4 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 72-96 hours after L4-adult molt. 6-7 days after first cleavage. 3-days post-L4 adult hermaphrodite Ce WBls:0000066

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
Sirolimus WBMol:00004127