WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed. Description  Genes up regulated in crh-1(nn3315) comparing to in N2.
Primary Identifier  WBPaper00038172:crh-1null_up_regulated

0 Anatomy Terms

593 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000112 alh-6 F56D12.1 Caenorhabditis elegans
WBGene00000176 aqp-8 K02G10.7 Caenorhabditis elegans
WBGene00000233 avr-15 R11G10.1 Caenorhabditis elegans
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000395 cdh-3 ZK112.7 Caenorhabditis elegans
WBGene00000399 cdh-7 R05H10.6 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000526 clc-5 C01C10.4 Caenorhabditis elegans
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
WBGene00000601 col-12 F15H10.1 Caenorhabditis elegans
WBGene00000602 col-13 F15H10.2 Caenorhabditis elegans
WBGene00000616 col-39 C09G5.4 Caenorhabditis elegans
WBGene00000618 col-41 T10B10.1 Caenorhabditis elegans
WBGene00000631 col-54 F33D11.3 Caenorhabditis elegans
WBGene00000656 col-80 C09G5.5 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00000666 col-91 F09G8.6 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000675 col-101 K02D7.3 Caenorhabditis elegans
WBGene00000677 col-103 F56B3.1 Caenorhabditis elegans
WBGene00000700 col-126 F54D1.2 Caenorhabditis elegans
WBGene00000702 col-128 F12F6.9 Caenorhabditis elegans
WBGene00000707 col-133 F52B11.4 Caenorhabditis elegans
WBGene00000710 col-137 Y51H4A.9 Caenorhabditis elegans
WBGene00000714 col-141 T15B7.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000793 crh-1 Y41C4A.4 Caenorhabditis elegans

0 Regulated By Molecule