WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated. Description  Genes with decreased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
Primary Identifier  WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray Regulated By Treatment  Bacteria infection: Enterococcus faecalis

0 Anatomy Terms

230 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000014 abf-3 F54B8.5 Caenorhabditis elegans
WBGene00000559 cnc-5 R09B5.10 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000657 col-81 F38A3.1 Caenorhabditis elegans
WBGene00000670 col-95 Y41C4A.16 Caenorhabditis elegans
WBGene00000705 col-131 C39E9.3 Caenorhabditis elegans
WBGene00001104 dsl-2 W09G12.1 Caenorhabditis elegans
WBGene00001237 elc-2 W03H1.2 Caenorhabditis elegans
WBGene00002062 ife-4 C05D9.5 Caenorhabditis elegans
WBGene00002260 lbp-8 T22G5.6 Caenorhabditis elegans
WBGene00003161 mdf-2 Y69A2AR.30 Caenorhabditis elegans
WBGene00003541 nas-22 T11F9.6 Caenorhabditis elegans
WBGene00004190 pars-2 T27F6.5 Caenorhabditis elegans
WBGene00004813 skr-7 Y47D7A.1 Caenorhabditis elegans
WBGene00004814 skr-8 C52D10.9 Caenorhabditis elegans
WBGene00004815 skr-9 C52D10.7 Caenorhabditis elegans
WBGene00004816 skr-10 Y105C5B.13 Caenorhabditis elegans
WBGene00004819 skr-13 C52D10.8 Caenorhabditis elegans
WBGene00005004 spp-19 K04A8.9 Caenorhabditis elegans
WBGene00005387 srh-171 Y60A3A.5 Caenorhabditis elegans
WBGene00005701 sru-38 R07B5.4 Caenorhabditis elegans
WBGene00005864 srw-117 C44C3.6 Caenorhabditis elegans
WBGene00005911 srx-20 R13H7.1 Caenorhabditis elegans
WBGene00006239 str-206 W06H8.7 Caenorhabditis elegans
WBGene00006665 twk-10 K04A8.4 Caenorhabditis elegans
WBGene00006865 slcf-2 ZK563.1 Caenorhabditis elegans
WBGene00006902 vet-6 F44F1.7 Caenorhabditis elegans
WBGene00007217 tads-1 C01A2.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

2 Processes

Primary Identifier
WBbiopr:00000008
WBbiopr:00000039

0 Regulated By Gene

0 Regulated By Molecule