WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Salmon was used to map the mRNA-seq reads with the worm database WS268, and its output files were imported to DESeq2 in R. The differentially expressed genes were filtered by fold change more than 2 and adjusted p-value < 0.05. The scatter plots were generated by the plot function in R. Description  Transcripts that showed significantly increased expression in hrde-1(tm1200) in gonads dissected from 1-day old adult animals.
Primary Identifier  WBPaper00061479:hrde-1(tm1200)_upregulated
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
organ producing either sperm or ova. gonad   WBbt:0005175

268 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000170 aqp-2 C01G6.1 Caenorhabditis elegans
WBGene00000213 asm-3 W03G1.7 Caenorhabditis elegans
WBGene00000443 ceh-20 F31E3.1 Caenorhabditis elegans
WBGene00000594 col-3 T28C6.6 Caenorhabditis elegans
WBGene00000683 col-109 Y38C1BA.3 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000708 col-135 M199.5 Caenorhabditis elegans
WBGene00000730 col-157 T11F9.9 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00000819 csp-1 Y48E1B.13 Caenorhabditis elegans
WBGene00001064 dpy-2 T14B4.6 Caenorhabditis elegans
WBGene00001069 dpy-7 F46C8.6 Caenorhabditis elegans
WBGene00001075 dpy-14 H27M09.4 Caenorhabditis elegans
WBGene00001076 dpy-17 F54D8.1 Caenorhabditis elegans
WBGene00001433 fkb-8 Y18D10A.25 Caenorhabditis elegans
WBGene00001475 fmi-1 F15B9.7 Caenorhabditis elegans
WBGene00001480 fmo-5 H24K24.5 Caenorhabditis elegans
WBGene00001570 gei-13 F58A4.11 Caenorhabditis elegans
WBGene00001671 gpa-9 F56H9.4 Caenorhabditis elegans
WBGene00001854 hil-3 F22F1.1 Caenorhabditis elegans
WBGene00001858 hil-7 C01B10.5 Caenorhabditis elegans
WBGene00001859 hil-8 T05E8.2 Caenorhabditis elegans
WBGene00001898 his-24 M163.3 Caenorhabditis elegans
WBGene00001921 his-47 B0035.7 Caenorhabditis elegans
WBGene00001947 his-73 W09H1.2 Caenorhabditis elegans
WBGene00001976 hmg-11 T05A7.4 Caenorhabditis elegans
WBGene00002039 hum-6 T10H10.1 Caenorhabditis elegans
WBGene00002063 ife-5 Y57A10A.30 Caenorhabditis elegans
WBGene00002248 lam-3 T22A3.8 Caenorhabditis elegans
WBGene00002348 myo-1 R06C7.10 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007624 hrde-1 C16C10.3 Caenorhabditis elegans

0 Regulated By Molecule