WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated. Description  Genes with decreased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.
Primary Identifier  WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq Regulated By Treatment  Bacteria infection: Photorhabdus luminescens

0 Anatomy Terms

790 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000008 aat-7 F54D12.3 Caenorhabditis elegans
WBGene00000169 aqp-1 F32A5.5 Caenorhabditis elegans
WBGene00000213 asm-3 W03G1.7 Caenorhabditis elegans
WBGene00000263 F23H11.5 F23H11.5 Caenorhabditis elegans
WBGene00000454 ceh-33 C10G8.7 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000559 cnc-5 R09B5.10 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000725 col-152 F32G8.5 Caenorhabditis elegans
WBGene00000756 col-183 F02D10.1 Caenorhabditis elegans
WBGene00000779 cpn-3 F28H1.2 Caenorhabditis elegans
WBGene00000821 csp-3 Y47H9C.6 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00000941 ddp-1 Y39A3CR.4 Caenorhabditis elegans
WBGene00000971 dhs-7 E04F6.7 Caenorhabditis elegans
WBGene00000989 dhs-26 ZK816.5 Caenorhabditis elegans
WBGene00001252 elt-4 C39B10.6 Caenorhabditis elegans
WBGene00001311 end-3 F58E10.5 Caenorhabditis elegans
WBGene00001448 flp-5 C03G5.7 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001682 gpc-2 F08B6.2 Caenorhabditis elegans
WBGene00001780 gst-32 Y53F4B.37 Caenorhabditis elegans
WBGene00001842 her-1 ZK287.8 Caenorhabditis elegans
WBGene00001858 hil-7 C01B10.5 Caenorhabditis elegans
WBGene00001875 his-1 T10C6.14 Caenorhabditis elegans
WBGene00001876 his-2 T10C6.13 Caenorhabditis elegans
WBGene00001877 his-3 T10C6.12 Caenorhabditis elegans
WBGene00001879 his-5 F45F2.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

2 Processes

Primary Identifier
WBbiopr:00000008
WBbiopr:00000039

0 Regulated By Gene

0 Regulated By Molecule