WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
Primary Identifier  WBPaper00037950:coelomocytes_larva_enriched
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles. coelomocyte   WBbt:0005751

226 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000097 aip-1 F58E10.4 Caenorhabditis elegans
WBGene00000120 aly-1 C01F6.5 Caenorhabditis elegans
WBGene00000247 bec-1 T19E7.3 Caenorhabditis elegans
WBGene00000455 ceh-34 C10G8.6 Caenorhabditis elegans
WBGene00000583 cof-2 C48E7.5 Caenorhabditis elegans
WBGene00000675 col-101 K02D7.3 Caenorhabditis elegans
WBGene00000707 col-133 F52B11.4 Caenorhabditis elegans
WBGene00000710 col-137 Y51H4A.9 Caenorhabditis elegans
WBGene00000735 col-162 Y2H9A.3 Caenorhabditis elegans
WBGene00000749 col-176 ZC373.7 Caenorhabditis elegans
WBGene00000782 cpr-2 F36D3.9 Caenorhabditis elegans
WBGene00000845 cup-4 C02C2.3 Caenorhabditis elegans
WBGene00001456 flp-13 F33D4.3 Caenorhabditis elegans
WBGene00001772 gst-24 F37B1.1 Caenorhabditis elegans
WBGene00002001 hars-1 T11G6.1 Caenorhabditis elegans
WBGene00002016 hsp-16.2 Y46H3A.3 Caenorhabditis elegans
WBGene00002018 hsp-16.41 Y46H3A.2 Caenorhabditis elegans
WBGene00002078 xpo-1 ZK742.1 Caenorhabditis elegans
WBGene00002601 let-381 F26B1.7 Caenorhabditis elegans
WBGene00003185 mek-1 K08A8.1 Caenorhabditis elegans
WBGene00003473 mtl-1 K11G9.6 Caenorhabditis elegans
WBGene00003596 ngp-1 T19A6.2 Caenorhabditis elegans
WBGene00003742 nlp-4 F59C6.6 Caenorhabditis elegans
WBGene00004303 ran-2 C29E4.3 Caenorhabditis elegans
WBGene00004509 rrf-2 M01G12.12 Caenorhabditis elegans
WBGene00004782 set-2 C26E6.9 Caenorhabditis elegans
WBGene00004802 sir-2.3 F46G10.3 Caenorhabditis elegans
WBGene00005011 F26F4.8 F26F4.8 Caenorhabditis elegans
WBGene00005759 srw-12 C41G6.2 Caenorhabditis elegans
WBGene00006539 tbb-6 T04H1.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule