WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in AVEL, AVER according to single cell RNAseq.
Primary Identifier  WBPaper00061340:AVE
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2 Anatomy Terms

Definition Name Synonym Primary Identifier
Ventral cord interneuron, like AVD but outputs restricted to anterior cord. AVEL lineage name: ABalpppaaaa WBbt:0003864
Ventral cord interneuron, like AVD but outputs restricted to anterior cord. AVER lineage name: ABpraaaaaaa WBbt:0003863

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000053 acr-14 T05C12.2 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000073 add-2 F57F5.4 Caenorhabditis elegans
WBGene00000220 atf-2 K08F8.2 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000396 cdh-4 F25F2.2 Caenorhabditis elegans
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
WBGene00000433 ceh-8 ZK265.4 Caenorhabditis elegans
WBGene00000464 ceh-44 Y54F10AM.4 Caenorhabditis elegans
WBGene00000696 col-122 T05A1.2 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00001052 dop-1 F15A8.5 Caenorhabditis elegans
WBGene00001189 egl-21 F01D4.4 Caenorhabditis elegans
WBGene00001208 egl-44 F28B12.2 Caenorhabditis elegans
WBGene00001210 egl-46 K11G9.4 Caenorhabditis elegans
WBGene00001335 F35A5.8 F35A5.8 Caenorhabditis elegans
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
WBGene00001386 far-2 F02A9.3 Caenorhabditis elegans
WBGene00001400 fax-1 F56E3.4 Caenorhabditis elegans
WBGene00001411 fem-1 F35D6.1 Caenorhabditis elegans
WBGene00001449 flp-6 F07D3.2 Caenorhabditis elegans
WBGene00001475 fmi-1 F15B9.7 Caenorhabditis elegans
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
WBGene00001502 ftt-2 F52D10.3 Caenorhabditis elegans
WBGene00001588 lgc-56 F09C12.1 Caenorhabditis elegans
WBGene00001612 glr-1 C06E1.4 Caenorhabditis elegans
WBGene00001613 glr-2 B0280.12 Caenorhabditis elegans
WBGene00001616 glr-5 ZC196.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule