WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated. Description  Genes with decreased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
Primary Identifier  WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq Regulated By Treatment  Bacteria infection: Enterococcus faecalis

0 Anatomy Terms

729 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000012 abf-1 C50F2.9 Caenorhabditis elegans
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000027 abu-4 Y5H2A.3 Caenorhabditis elegans
WBGene00000256 bli-6 Y73B6BL.34 Caenorhabditis elegans
WBGene00000263 F23H11.5 F23H11.5 Caenorhabditis elegans
WBGene00000427 ced-13 R09F10.9 Caenorhabditis elegans
WBGene00000430 ceh-5 C16C2.1 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00000555 cnc-1 R09B5.2 Caenorhabditis elegans
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000614 col-37 ZK863.2 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000648 col-72 W09G10.1 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000693 col-119 C53B4.5 Caenorhabditis elegans
WBGene00000706 col-132 C39E9.9 Caenorhabditis elegans
WBGene00000756 col-183 F02D10.1 Caenorhabditis elegans
WBGene00000760 col-187 C30F2.1 Caenorhabditis elegans
WBGene00000851 cut-1 C47G2.1 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00000930 dao-4 ZC373.6 Caenorhabditis elegans
WBGene00000941 ddp-1 Y39A3CR.4 Caenorhabditis elegans
WBGene00001039 dnj-21 T19B4.4 Caenorhabditis elegans
WBGene00001103 dsl-1 W09G12.4 Caenorhabditis elegans
WBGene00001252 elt-4 C39B10.6 Caenorhabditis elegans
WBGene00001311 end-3 F58E10.5 Caenorhabditis elegans
WBGene00001386 far-2 F02A9.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

2 Processes

Primary Identifier
WBbiopr:00000008
WBbiopr:00000039

0 Regulated By Gene

0 Regulated By Molecule