WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  edgeR Description  Transcripts that showed decreased expression in smg-1(r910) and smg-1(r910) smg-2(r915) mutants comparing to in N2, and their mRNAs do not co-purify with SMG-2.
Primary Identifier  WBPaper00053308:NMD(-)_downregulated_SMD-2_non-binding_ClassIV
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0 Anatomy Terms

65 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000556 cnc-2 R09B5.3 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00001388 far-4 F15B9.2 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00002013 hsp-12.6 F38E11.2 Caenorhabditis elegans
WBGene00003734 nhx-6 F58E1.6 Caenorhabditis elegans
WBGene00003767 nlp-29 B0213.4 Caenorhabditis elegans
WBGene00006611 tre-5 C23H3.7 Caenorhabditis elegans
WBGene00007682 C18D11.6 C18D11.6 Caenorhabditis elegans
WBGene00008538 sqrd-1 F02H6.5 Caenorhabditis elegans
WBGene00009042 F22B5.4 F22B5.4 Caenorhabditis elegans
WBGene00009213 thn-1 F28D1.3 Caenorhabditis elegans
WBGene00009339 F32G8.3 F32G8.3 Caenorhabditis elegans
WBGene00009908 F49H6.5 F49H6.5 Caenorhabditis elegans
WBGene00010005 cnc-7 F53H2.2 Caenorhabditis elegans
WBGene00012383 ttr-17 Y5F2A.2 Caenorhabditis elegans
WBGene00012783 Y43C5A.3 Y43C5A.3 Caenorhabditis elegans
WBGene00013080 Y51A2D.13 Y51A2D.13 Caenorhabditis elegans
WBGene00013266 faxc-1 Y57A10A.26 Caenorhabditis elegans
WBGene00014173 srlf-34 ZK970.7 Caenorhabditis elegans
WBGene00015046 nlp-34 B0213.17 Caenorhabditis elegans
WBGene00016783 irg-2 C49G7.5 Caenorhabditis elegans
WBGene00017466 F14F9.3 F14F9.3 Caenorhabditis elegans
WBGene00017582 F18G5.6 F18G5.6 Caenorhabditis elegans
WBGene00018724 F53A9.1 F53A9.1 Caenorhabditis elegans
WBGene00018729 F53A9.6 F53A9.6 Caenorhabditis elegans
WBGene00018748 F53C3.4 F53C3.4 Caenorhabditis elegans
WBGene00018750 F53C3.6 F53C3.6 Caenorhabditis elegans
WBGene00019963 rips-1 R08E5.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004879 smg-1 C48B6.6 Caenorhabditis elegans

0 Regulated By Molecule