WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes with no change in hcf-1(-), upregulated in sir-2.1(O/E) and no change in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1nc_sir-2.1up_daf-2nc
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0 Anatomy Terms

11 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000107 alh-1 F54D8.3 Caenorhabditis elegans
WBGene00001624 glt-6 R05G6.6 Caenorhabditis elegans
WBGene00003995 pgp-1 K08E7.9 Caenorhabditis elegans
WBGene00008485 ugt-43 F01D4.1 Caenorhabditis elegans
WBGene00009980 F53F1.2 F53F1.2 Caenorhabditis elegans
WBGene00010706 cyp-14A2 K09A11.3 Caenorhabditis elegans
WBGene00011147 R08D7.7 R08D7.7 Caenorhabditis elegans
WBGene00012699 Y39B6A.41 Y39B6A.41 Caenorhabditis elegans
WBGene00016630 acer-1 C44B7.10 Caenorhabditis elegans
WBGene00022721 ugtp-1 ZK370.7 Caenorhabditis elegans
WBGene00015228 B0511.2 B0511.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule