WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2. Description  Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in body wall muscle.
Primary Identifier  WBPaper00066447:Day8_vs_Day1_upregulated_BodyWallMuscle
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
type of 95 cells that make up muscles of the body wall. body wall muscle cell body muscle cell WBbt:0006804

9 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003261 mir-2 M04C9.7 Caenorhabditis elegans
WBGene00003262 mir-34 Y41G9A.7 Caenorhabditis elegans
WBGene00003264 mir-36 Y62F5A.3 Caenorhabditis elegans
WBGene00003265 mir-37 Y62F5A.4 Caenorhabditis elegans
WBGene00003267 mir-39 Y62F5A.6 Caenorhabditis elegans
WBGene00003286 mir-58.1 Y67D8A.4 Caenorhabditis elegans
WBGene00003281 mir-53 F36H1.8 Caenorhabditis elegans
WBGene00003347 mir-253 F44E7.11 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule