WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00087820 Genotype  For fog-1 RNAi, puf-8; lip-1 animals were placed on RNAi at the L2 stage, allowing sperm to be generating prior to oocyte induction. puf-8; lip-1 progeny were picked at ~48 hours post-L4 and assessed by presence of oocytes.
Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001481 fog-1 Y54E10A.4 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10A.4a Y54E10A.4a 1218   I: 3213118-3213202
CDS:Y54E10A.4b Y54E10A.4b 1860   I: 3211058-3211119
CDS:Y54E10A.4c Y54E10A.4c 1053   I: 3213879-3213944

1 Laboratories

Primary Identifier
JK

2 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000484 embryo small The organism's size during the embryonic developmental stage is decreased compared to that observed in control.

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000291 no oocytes Hermaphrodites lack fully specialized female gametes that are competent for fertilization.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00035609

0 Strain