WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54E10A.4a Sequence Name  Y54E10A.4a
Length (nt)  1218   Chromosome Location  I: 3213118-3213202
Chromosome . Primary Identifier  I Chromosome Location . Start  3213118
Chromosome Location . End  3213202
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27479 FOG-1, isoform a 46.8 405 Caenorhabditis elegans
 

Other

14 RNAi

WormBase ID
WBRNAi00087820
WBRNAi00064341
WBRNAi00075634
WBRNAi00061019
WBRNAi00004977
WBRNAi00061199
WBRNAi00061209
WBRNAi00061214
WBRNAi00081940
WBRNAi00081941
WBRNAi00057349
WBRNAi00064344
WBRNAi00061210
WBRNAi00061211

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.4a 3213118 3213202 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001481 fog-1 Y54E10A.4 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.4a 3213118 3213202 1
CDS:Y54E10A.4a 3213799 3213944 1
CDS:Y54E10A.4a 3214009 3214311 1
CDS:Y54E10A.4a 3215313 3215762 1
CDS:Y54E10A.4a 3216788 3217021 1

1 Sequence

Length
1218

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E10A.4a.1 Y54E10A.4a.1 2118   I: 3211046-3217267
Transcript:Y54E10A.4a.2 Y54E10A.4a.2 1592   I: 3212990-3217267