WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00112228 Genotype  Intestinal RNAi of cmd-1
Phenotype Remark  The loss of cmd-1 expression altered defecation frequency and they began to exhibit weak reiterations of the defecation motor program. Authors observed oscillations in both calcium and pH occurring every 18 sec, mirroring the observed changes to the defecation behavioral period. Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000552 cmd-1 T21H3.3 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21H3.3a T21H3.3a 450   V: 1156308-1156341
CDS:T21H3.3b T21H3.3b 342   V: 1156697-1156861

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0000207 defecation cycle variant Any variation in the stereotyped sequence of muscle contractions that result in defecation over a fixed time period compared to control .
WBPhenotype:0000564 echo defecation cycle Muscle contractions that make up the defecation motor program are repeated before the onset of the next cycle unlike in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041987

0 Strain