WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00066949 Genotype  bar-1(ga80)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1a Y55F3AL.1a 5838   IV: 959521-959658
CDS:Y55F3AL.1b Y55F3AL.1b 5871   IV: 959521-959658
CDS:Y55F3AL.1d Y55F3AL.1d 5271   IV: 964323-964441
CDS:Y55F3AL.1e Y55F3AL.1e 3525   IV: 972383-972922
CDS:Y55F3AL.1c Y55F3AL.1c 5304   IV: 964323-964441
CDS:Y55F3AL.1f Y55F3AL.1f 3558   IV: 972383-972922

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain