WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00067630 Genotype  bar-1(ga80)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1a T08A11.1a 5139   III: 4248670-4248820
CDS:T08A11.1b T08A11.1b 5145   III: 4248670-4248820
CDS:T08A11.1e T08A11.1e 5145   III: 4248670-4248820
CDS:T08A11.1f T08A11.1f 5151   III: 4248670-4248820
CDS:T08A11.1g T08A11.1g 5151   III: 4248670-4248820
CDS:T08A11.1c T08A11.1c 5145   III: 4248670-4248820
CDS:T08A11.1d T08A11.1d 5151   III: 4248670-4248820
CDS:T08A11.1h T08A11.1h 5157   III: 4248670-4248820

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain