WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T08A11.1f Sequence Name  T08A11.1f
Length (nt)  5151   Chromosome Location  III: 4248670-4248820
Chromosome . Primary Identifier  III Chromosome Location . Start  4248670
Chromosome Location . End  4248820
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08A11.1f

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE54622 DEPD-5, isoform f 195.5 1716 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00067381
WBRNAi00067630
WBRNAi00002404
WBRNAi00052818
WBRNAi00018415
WBRNAi00005079

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T08A11.1f 4248670 4248820 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans

17 Locations


Feature . Primary Identifier
Start End Strand
CDS:T08A11.1f 4248670 4248820 -1
CDS:T08A11.1f 4249533 4250083 -1
CDS:T08A11.1f 4250748 4251010 -1
CDS:T08A11.1f 4251371 4251460 -1
CDS:T08A11.1f 4251856 4252372 -1
CDS:T08A11.1f 4252612 4253013 -1
CDS:T08A11.1f 4253292 4253526 -1
CDS:T08A11.1f 4253576 4253924 -1
CDS:T08A11.1f 4257711 4258013 -1
CDS:T08A11.1f 4258057 4258138 -1
CDS:T08A11.1f 4258192 4259064 -1
CDS:T08A11.1f 4259572 4259754 -1
CDS:T08A11.1f 4259802 4259939 -1
CDS:T08A11.1f 4260882 4261277 -1
CDS:T08A11.1f 4261526 4261633 -1
CDS:T08A11.1f 4261680 4262015 -1
CDS:T08A11.1f 4262875 4263048 -1

1 Sequence

Length
5151

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08A11.1f.1 T08A11.1f.1 5669   III: 4248152-4263048