WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00068204 Genotype  sma-6(e1482)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans

12 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK899.8k ZK899.8k 3618   X: 9472470-9472620
CDS:ZK899.8a ZK899.8a 3624   X: 9472470-9472620
CDS:ZK899.8c ZK899.8c 3780   X: 9479502-9479848
CDS:ZK899.8f ZK899.8f 2871   X: 9501692-9501774
CDS:ZK899.8l ZK899.8l 2847   X: 9502315-9502373
CDS:ZK899.8j ZK899.8j 2373   X: 9512819-9513033
CDS:ZK899.8b ZK899.8b 3513   X: 9475283-9475384
CDS:ZK899.8d ZK899.8d 3414   X: 9480667-9480919
CDS:ZK899.8e ZK899.8e 3147   X: 9487397-9487442
CDS:ZK899.8g ZK899.8g 2364   X: 9512819-9513024
CDS:ZK899.8h ZK899.8h 3267   X: 9495412-9495517
CDS:ZK899.8i ZK899.8i 2481   X: 9510538-9510725

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain