WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00001781 Remark  yk348d4
Secondary Identifier  SA:yk348d4

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans

11 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4b C53B4.4b 4089   IV: 8975637-8975681
CDS:C53B4.4e C53B4.4e 3972   IV: 8975637-8975681
CDS:C53B4.4j C53B4.4j 3963   IV: 8975637-8975681
CDS:C53B4.4k C53B4.4k 4098   IV: 8975637-8975681
CDS:C53B4.4a C53B4.4a 4083   IV: 8975637-8975681
CDS:C53B4.4d C53B4.4d 3906   IV: 8975637-8975681
CDS:C53B4.4f C53B4.4f 3795   IV: 8975637-8975681
CDS:C53B4.4g C53B4.4g 3912   IV: 8975637-8975681
CDS:C53B4.4h C53B4.4h 3978   IV: 8975637-8975681
CDS:C53B4.4i C53B4.4i 3969   IV: 8975637-8975681
CDS:C53B4.4l C53B4.4l 4092   IV: 8975637-8975681

2 Laboratories

Primary Identifier
SA
YK

0 Phenotype

5 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004651

0 Strain