WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C53B4.4k Sequence Name  C53B4.4k
Length (nt)  4098   Chromosome Location  IV: 8975637-8975681
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975637
Chromosome Location . End  8975681
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4k

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE53016 PDZD-8, isoform k 150.6 1365 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00001781
WBRNAi00043070
WBRNAi00012343
WBRNAi00030100
WBRNAi00060466
WBRNAi00060465
WBRNAi00060467
WBRNAi00060468

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C53B4.4k 8975637 8975681 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:C53B4.4k 8975637 8975681 1
CDS:C53B4.4k 8975797 8976026 1
CDS:C53B4.4k 8976113 8976287 1
CDS:C53B4.4k 8976396 8976593 1
CDS:C53B4.4k 8976638 8976797 1
CDS:C53B4.4k 8977056 8977523 1
CDS:C53B4.4k 8977730 8977906 1
CDS:C53B4.4k 8978586 8978687 1
CDS:C53B4.4k 8980361 8980707 1
CDS:C53B4.4k 8980879 8981358 1
CDS:C53B4.4k 8981695 8982083 1
CDS:C53B4.4k 8982146 8982393 1
CDS:C53B4.4k 8982748 8983053 1
CDS:C53B4.4k 8983108 8983216 1
CDS:C53B4.4k 8983263 8983422 1
CDS:C53B4.4k 8983470 8983647 1
CDS:C53B4.4k 8983694 8983848 1
CDS:C53B4.4k 8983955 8984125 1

1 Sequence

Length
4098

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C53B4.4k.1 C53B4.4k.1 4659   IV: 8975526-8984575