WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00002404 Remark  yk397b2
Secondary Identifier  SA:yk397b2

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011604 depd-5 T08A11.1 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08A11.1a T08A11.1a 5139   III: 4248670-4248820
CDS:T08A11.1b T08A11.1b 5145   III: 4248670-4248820
CDS:T08A11.1e T08A11.1e 5145   III: 4248670-4248820
CDS:T08A11.1f T08A11.1f 5151   III: 4248670-4248820
CDS:T08A11.1g T08A11.1g 5151   III: 4248670-4248820
CDS:T08A11.1c T08A11.1c 5145   III: 4248670-4248820
CDS:T08A11.1d T08A11.1d 5151   III: 4248670-4248820
CDS:T08A11.1h T08A11.1h 5157   III: 4248670-4248820

2 Laboratories

Primary Identifier
SA
YK

0 Phenotype

5 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004651

0 Strain