WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00050561 Remark 
Secondary Identifier 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004751 sea-2 K10G6.3 Caenorhabditis elegans

18 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10G6.3f K10G6.3f 5478   II: 3950377-3950396
CDS:K10G6.3h K10G6.3h 5043   II: 3950377-3950396
CDS:K10G6.3i K10G6.3i 5472   II: 3950377-3950396
CDS:K10G6.3j K10G6.3j 4755   II: 3962223-3962344
CDS:K10G6.3b K10G6.3b 5166   II: 3962223-3962344
CDS:K10G6.3c K10G6.3c 5190   II: 3962223-3962344
CDS:K10G6.3o K10G6.3o 4944   II: 3962522-3962853
CDS:K10G6.3d K10G6.3d 4464   II: 3964340-3965280
CDS:K10G6.3m K10G6.3m 4029   II: 3964340-3965280
CDS:K10G6.3s K10G6.3s 3306   II: 3966495-3969217
CDS:K10G6.3a K10G6.3a 5619   II: 3962223-3962344
CDS:K10G6.3e K10G6.3e 2877   II: 3966495-3969217
CDS:K10G6.3g K10G6.3g 5907   II: 3950377-3950396
CDS:K10G6.3k K10G6.3k 4950   II: 3962522-3962853
CDS:K10G6.3l K10G6.3l 4515   II: 3962522-3962853
CDS:K10G6.3n K10G6.3n 5379   II: 3962522-3962853
CDS:K10G6.3q K10G6.3q 4458   II: 3964340-3965280
CDS:K10G6.3r K10G6.3r 4893   II: 3964340-3965280

1 Laboratories

Primary Identifier
TH

0 Phenotype

4 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025054

0 Strain