WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065341 Genotype  mec-4::gfp
Phenotype Remark  polarity of both ALM and PLM was often reversed or symmetric Remark  in materials and methods the authors state RNAi experiments were performed in RNAi-sensitized strains rrf-3(pk1426) and eri-1(mg366), but do not make it explicit which was used for which experiment

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006933 vps-35 F59G1.3 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59G1.3 F59G1.3 2466   II: 5907820-5907924

1 Laboratories

Primary Identifier
SK

4 Phenotype

Identifier Name Description
WBPhenotype:0000643 locomotion variant Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000104 cell polarity variant Contents or structures of a cell are no longer restricted/localized to their typical positions within the cell.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027192

0 Strain