WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077402 Phenotype Remark  Intestinal cells under go necrotic cell death and intestine degrades in worms 5 or 6 days post egg lay.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002147 ire-1 C41C4.4 Caenorhabditis elegans
WBGene00003970 pek-1 F46C3.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41C4.4a C41C4.4a 2904   II: 8112670-8112843
CDS:F46C3.1 F46C3.1 3234   X: 11410575-11410661

0 Laboratories

7 Phenotype

Identifier Name Description
WBPhenotype:0000646 sluggish Animals move more slowly compared with control animals.
WBPhenotype:0001428 intestinal vacuole Vacuoles accumulate in the intestine.
WBPhenotype:0000848 developmental delay The developmental progression of an animal over time, from its formation to its mature structure is delayed compared to control.
WBPhenotype:0000032 sick Animals exhibit some combination of abnormal features relating to size, movement, body integrity, pigmentation, viability, fertility etc.
WBPhenotype:0000082 L2 arrest The developmental program of the animals does not continue past the second larval stage (L2).
WBPhenotype:0000709 pharyngeal morphology variant Variations in the form or composition of the mouthparts at the anterior end of the digestive tract which contain a series of radial muscles, related neurons and epithelial cells, and several gland cells which may aid in digestion compared to control (Wormatlas).
WBPhenotype:0000708 intestinal development variant Variations in the progression of the intestine over time from its initial formation to its mature structure compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005044

1 Strain

WormBase ID
WBStrain00000001