WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C41C4.4a Sequence Name  C41C4.4a
Length (nt)  2904   Chromosome Location  II: 8112670-8112843
Chromosome . Primary Identifier  II Chromosome Location . Start  8112670
Chromosome Location . End  8112843
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41C4.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE35836 IRE-1, isoform a 109.8 967 Caenorhabditis elegans
 

Other

44 RNAi

WormBase ID
WBRNAi00042277
WBRNAi00077402
WBRNAi00065378
WBRNAi00007958
WBRNAi00011832
WBRNAi00093106
WBRNAi00093173
WBRNAi00076208
WBRNAi00077400
WBRNAi00029717
WBRNAi00113279
WBRNAi00093171
WBRNAi00093081
WBRNAi00077192
WBRNAi00093098
WBRNAi00093265
WBRNAi00093266
WBRNAi00093267
WBRNAi00093262
WBRNAi00093263
WBRNAi00093264
WBRNAi00093257
WBRNAi00093258
WBRNAi00113050
WBRNAi00108488
WBRNAi00115391
WBRNAi00108778
WBRNAi00108777
WBRNAi00108779
WBRNAi00087883

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C41C4.4a 8112670 8112843 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002147 ire-1 C41C4.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C41C4.4a 8112670 8112843 -1
CDS:C41C4.4a 8112894 8112968 -1
CDS:C41C4.4a 8113020 8113435 -1
CDS:C41C4.4a 8113484 8114596 -1
CDS:C41C4.4a 8114846 8115170 -1
CDS:C41C4.4a 8122911 8123035 -1
CDS:C41C4.4a 8124016 8124256 -1
CDS:C41C4.4a 8124305 8124528 -1
CDS:C41C4.4a 8124579 8124702 -1
CDS:C41C4.4a 8124754 8124840 -1

1 Sequence

Length
2904

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C41C4.4a.1 C41C4.4a.1 3401   II: 8112243-8124910