WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091268 Phenotype Remark  Muscle formation was somewhat disrupted compared with the wild type.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation (T01D1.2a.1). However, authors note that they targeted the unique tether region between RRM2 and RRM3. This region was chosen because there were no significant matches to other proteins in the sequence databases.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans

19 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2a T01D1.2a 1755   II: 163142-163324
CDS:T01D1.2g T01D1.2g 1542   II: 163142-163324
CDS:T01D1.2l T01D1.2l 1770   II: 163142-163324
CDS:T01D1.2d T01D1.2d 1608   II: 163142-163324
CDS:T01D1.2o T01D1.2o 1170   II: 164595-164643
CDS:T01D1.2q T01D1.2q 1263   II: 164641-164643
CDS:T01D1.2s T01D1.2s 1071   II: 166822-166905
CDS:T01D1.2t T01D1.2t 1065   II: 166822-166905
CDS:T01D1.2u T01D1.2u 846   II: 166822-166905
CDS:T01D1.2v T01D1.2v 843   II: 167930-168047
CDS:T01D1.2b T01D1.2b 1059   II: 166822-166905
CDS:T01D1.2e T01D1.2e 1761   II: 163142-163324
CDS:T01D1.2f T01D1.2f 1767   II: 163142-163324
CDS:T01D1.2m T01D1.2m 1395   II: 164595-164643
CDS:T01D1.2n T01D1.2n 1389   II: 164595-164643
CDS:T01D1.2p T01D1.2p 1269   II: 164641-164643
CDS:T01D1.2r T01D1.2r 1044   II: 164641-164643
CDS:T01D1.2w T01D1.2w 837   II: 167930-168047
CDS:T01D1.2x T01D1.2x 618   II: 167930-168047

1 Laboratories

Primary Identifier
CB

3 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000053 paralyzed arrested elongation two fold Movement and elongation ceases at the two-fold stage. The myofilament lattice in body wall muscle cells is variant. However, development in embryos continues. Embryos hatch as inviable larvae.
WBPhenotype:0000622 muscle system development variant Any variation in the progression of the muscle system over time, from its formation to its mature state compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00003747

0 Strain