WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114837 Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Authors did state they used the following clones to create transcribe dsRNAs for this experiment: yk133g6, yk45e9.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004213 ptp-1 C48D5.2 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D5.2a C48D5.2a 3081   III: 3590770-3590907
CDS:C48D5.2b C48D5.2b 1875   III: 3599201-3599334
CDS:C48D5.2c C48D5.2c 1770   III: 3595225-3595253

0 Laboratories

0 Phenotype

2 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000688 sterile Animals generate defective gametes, are otherwise unable to reproduce or they generate progeny that are unable to reproduce.
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00024261

0 Strain