WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00012343 Secondary Identifier  JA:C53B4.4

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans

11 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4b C53B4.4b 4089   IV: 8975637-8975681
CDS:C53B4.4e C53B4.4e 3972   IV: 8975637-8975681
CDS:C53B4.4j C53B4.4j 3963   IV: 8975637-8975681
CDS:C53B4.4k C53B4.4k 4098   IV: 8975637-8975681
CDS:C53B4.4a C53B4.4a 4083   IV: 8975637-8975681
CDS:C53B4.4d C53B4.4d 3906   IV: 8975637-8975681
CDS:C53B4.4f C53B4.4f 3795   IV: 8975637-8975681
CDS:C53B4.4g C53B4.4g 3912   IV: 8975637-8975681
CDS:C53B4.4h C53B4.4h 3978   IV: 8975637-8975681
CDS:C53B4.4i C53B4.4i 3969   IV: 8975637-8975681
CDS:C53B4.4l C53B4.4l 4092   IV: 8975637-8975681

1 Laboratories

Primary Identifier
JA

0 Phenotype

8 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005654

0 Strain