WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00012598 Secondary Identifier  JA:D2085.5

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans

13 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5a D2085.5a 3147   II: 8669353-8669461
CDS:D2085.5d D2085.5d 3540   II: 8669353-8669461
CDS:D2085.5g D2085.5g 3297   II: 8669353-8669461
CDS:D2085.5f D2085.5f 3090   II: 8669353-8669461
CDS:D2085.5b D2085.5b 3024   II: 8669353-8669461
CDS:D2085.5h D2085.5h 3420   II: 8669353-8669461
CDS:D2085.5c D2085.5c 3267   II: 8669353-8669461
CDS:D2085.5j D2085.5j 3441   II: 8669353-8669461
CDS:D2085.5i D2085.5i 3168   II: 8669353-8669461
CDS:D2085.5m D2085.5m 5058   II: 8669353-8669461
CDS:D2085.5l D2085.5l 5229   II: 8669353-8669461
CDS:D2085.5e D2085.5e 3363   II: 8669353-8669461
CDS:D2085.5k D2085.5k 5253   II: 8669353-8669461

1 Laboratories

Primary Identifier
JA

0 Phenotype

8 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005654

0 Strain