WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:D2085.5a Sequence Name  D2085.5a
Length (nt)  3147   Chromosome Location  II: 8669353-8669461
Chromosome . Primary Identifier  II Chromosome Location . Start  8669353
Chromosome Location . End  8669461
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE34786 HGAP-2, isoform a 115.6 1048 Caenorhabditis elegans
 

Other

12 RNAi

WormBase ID
WBRNAi00070355
WBRNAi00043504
WBRNAi00012598
WBRNAi00030419
WBRNAi00088897
WBRNAi00103239
WBRNAi00070352
WBRNAi00070354
WBRNAi00070353
WBRNAi00088867
WBRNAi00088885
WBRNAi00088950

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:D2085.5a 8669353 8669461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:D2085.5a 8669353 8669461 -1
CDS:D2085.5a 8669511 8669627 -1
CDS:D2085.5a 8669683 8669848 -1
CDS:D2085.5a 8670176 8670604 -1
CDS:D2085.5a 8670660 8670907 -1
CDS:D2085.5a 8671360 8671629 -1
CDS:D2085.5a 8671676 8671757 -1
CDS:D2085.5a 8672707 8673124 -1
CDS:D2085.5a 8673173 8673295 -1
CDS:D2085.5a 8673617 8673720 -1
CDS:D2085.5a 8673773 8674171 -1
CDS:D2085.5a 8674225 8674701 -1
CDS:D2085.5a 8674868 8675005 -1
CDS:D2085.5a 8677203 8677269 -1

1 Sequence

Length
3147

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:D2085.5a.1 D2085.5a.1 3367   II: 8669133-8677269