WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00019350 Secondary Identifier  JA:T27F2.2

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans

13 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2a T27F2.2a 2988   V: 11631872-11631940
CDS:T27F2.2b T27F2.2b 2961   V: 11631872-11631940
CDS:T27F2.2c T27F2.2c 2892   V: 11631872-11631940
CDS:T27F2.2h T27F2.2h 2958   V: 11631872-11631940
CDS:T27F2.2l T27F2.2l 2991   V: 11631872-11631940
CDS:T27F2.2m T27F2.2m 2964   V: 11631872-11631940
CDS:T27F2.2g T27F2.2g 2865   V: 11631872-11631940
CDS:T27F2.2i T27F2.2i 2820   V: 11631872-11631940
CDS:T27F2.2d T27F2.2d 2847   V: 11631872-11631940
CDS:T27F2.2e T27F2.2e 2994   V: 11631872-11631940
CDS:T27F2.2f T27F2.2f 2985   V: 11631872-11631940
CDS:T27F2.2j T27F2.2j 2898   V: 11631872-11631940
CDS:T27F2.2k T27F2.2k 2871   V: 11631872-11631940

1 Laboratories

Primary Identifier
JA

0 Phenotype

8 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005654

0 Strain