WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T27F2.2a Sequence Name  T27F2.2a
Length (nt)  2988   Chromosome Location  V: 11631872-11631940
Chromosome . Primary Identifier  V Chromosome Location . Start  11631872
Chromosome Location . End  11631940
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42943 SIPA-1, isoform a 111.5 995 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00054336
WBRNAi00019350

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T27F2.2a 11631872 11631940 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:T27F2.2a 11631872 11631940 -1
CDS:T27F2.2a 11632132 11632272 -1
CDS:T27F2.2a 11632320 11632461 -1
CDS:T27F2.2a 11632527 11632667 -1
CDS:T27F2.2a 11632712 11633173 -1
CDS:T27F2.2a 11633252 11633492 -1
CDS:T27F2.2a 11633542 11633679 -1
CDS:T27F2.2a 11633738 11634205 -1
CDS:T27F2.2a 11634253 11634517 -1
CDS:T27F2.2a 11634565 11634686 -1
CDS:T27F2.2a 11634797 11635372 -1
CDS:T27F2.2a 11636984 11637206 -1

1 Sequence

Length
2988

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T27F2.2a.1 T27F2.2a.1 3420   V: 11631440-11637206