WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064915 Genotype  unc-54::POLYQ(Q35)-YFP
Phenotype Remark  RNAi caused early onset of foci formation (polyglutamine-YFP aggregation) Remark  In strains expressing unc-54::POLYQ(Q35)-YFP, a diffuse YFP staining pattern is seen in all expressing cells from the moment they hatch through young adulthood. Onset of aggregation is invariable and occurs after the animals reach adulthood at the fifth day after hatching. L1 larva were feed RNAi bacteria in liquid culture and animals were assayed for fluorescent foci three days post-L1.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022117 Y71F9AL.12 Y71F9AL.12 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AL.12a Y71F9AL.12a 870   I: 2870608-2870631
CDS:Y71F9AL.12c Y71F9AL.12c 378   I: 2870608-2870631
CDS:Y71F9AL.12d Y71F9AL.12d 387   I: 2870608-2870631
CDS:Y71F9AL.12g Y71F9AL.12g 399   I: 2870608-2870631
CDS:Y71F9AL.12b Y71F9AL.12b 879   I: 2870608-2870631
CDS:Y71F9AL.12e Y71F9AL.12e 891   I: 2870608-2870631
CDS:Y71F9AL.12f Y71F9AL.12f 900   I: 2870608-2870631
CDS:Y71F9AL.12h Y71F9AL.12h 408   I: 2870608-2870631

1 Laboratories

Primary Identifier
NL

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001405 protein aggregation variant Variations that result in the accumulation of soluble/insoluble protein aggregates in a particular cell or tissue, compared to control. Protein aggregates are often formed by interactions between misfolded protein molecules and/or deficiencies in proper protein folding.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00006510

0 Strain