WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091157 Genotype  unc-119(ed3) III; cbgIs91[pPept-1:pept-1::DsRed;unc-119(+)]; pwIs50[lmp-1::GFP +Cb-unc-119(+)]
Phenotype Remark  Distribution & morphology of late endosomes is affected, as determined by the late endosome marker LMP-1::GFP; less apical signal or retention of PEPT-1::DsRed is observed Remark  (Table S3) F29G6.3 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009259 hpo-34 F29G6.3 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29G6.3c F29G6.3c 4362   X: 11511738-11511845
CDS:F29G6.3d F29G6.3d 4089   X: 11511738-11511845
CDS:F29G6.3f F29G6.3f 5406   X: 11512963-11517504
CDS:F29G6.3a F29G6.3a 2319   X: 11511738-11511845
CDS:F29G6.3b F29G6.3b 5358   X: 11512963-11515071

1 Laboratories

Primary Identifier
MZE

3 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002091 late endosome morphology variant Any variation in the form or composition of membrane bound organelles, known as late endosomes, that traffic material from early endosomes to internal compartments of the cell, such as lysosomes or the Golgi apparatus, compared to control.
WBPhenotype:0002105 late endosome localization variant Any variation in the subcellular localization of membrane bound organelles, known as late endosomes, that traffic material from early endosomes to internal compartments of the cell, such as lysosomes or the Golgi apparatus, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain